PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002246.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 627aa    MW: 72125.7 Da    PI: 6.5086
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002246.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.91.6e-1892189190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwe 77 
                              +fY++YA  +GF+vr s+ +k+ r+g ++ + + Cs+eg++ ++++          ++k+ r+r+++ +gC+a+ ++++++dg ++
  Itr_sc002246.1_g00001.1  92 QFYKHYAAVAGFDVRCSTLRKT-RDGDVKVKCLLCSREGQNLQSNEVnqtpiedtsEKKQTRRRVSNWVGCNARCELRRQEDGDYV 176
                              6******************999.7888*************9988777899***9988888889999******************** PP

                     FAR1  78 vtkleleHnHela 90 
                              +t l++ HnH l+
  Itr_sc002246.1_g00001.1 177 MTVLQEAHNHRLC 189
                              ************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1592189IPR004330FAR1 DNA binding domain
PfamPF105514.8E-12311359IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
LELRRKKYDS YISKENTPYP THSLEVFQGL RKEEGISTQE PHPAMEQDGE RDFGGTTDMA  60
KQYGNNECIP ECDESIRPYL GQRFPTIDEG VQFYKHYAAV AGFDVRCSTL RKTRDGDVKV  120
KCLLCSREGQ NLQSNEVNQT PIEDTSEKKQ TRRRVSNWVG CNARCELRRQ EDGDYVMTVL  180
QEAHNHRLCS ELGRPFLKIN RELGIGHQAF IAICAKVNIG TSKAFEMYKE MVGGFKNIGA  240
TMVDLRNCRR DVHAHLHEAD AQALINKYVQ KKSLFPMYTF EYDVDEENHI RRVFWADPTA  300
KKNYTHFGDM VAFDATYRTN RYKLVFLPFT GVDNHKKCAT FGACLISKED IASYTWLLVG  360
ERAGVNLAKN ETFRKKLNAM VWDETLGHEE FELSWHAVMT GYGLEDHPWF SQLFEIRSNW  420
IEAYFCEVFM GGLMRTTSRS KAENGLFGAC INEDGSLLEF FTQFESVIEM QRHKQARLIA  480
ECEASLPSTK TPLKVEKHAS SIYTITIFYD VKTEIYEGCL SCKITSKDEA QDTISHVFVV  540
LKDNDAEMIP PQYVLPRWTR TAWPHNKNEK PTGQDAESKN ETEDNAITAK LWNELYTCMA  600
MSKGNTPEQQ QMLNFMLLRA WHMGANL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-57FAR1-related sequence 5